R/markerGenes_human.R
In Morriseylab/scExtras: Single cell data analysis helper functions
markergenes=c('TM4SF1','KLF5','TFCP2L1','KRT17','ABCA3','CXCL14', 'SCGB3A2','SCGB1A1','SFTPC','MSMB',
'FOXJ1','PTPRC',"VWF",'PECAM1','PDGFRB','CD68','AGER','PDGFRA','HEY2','KRT5',"STC1","MFAP5",
"DCN","ACTA2","WNT2","AXIN2","SPOCK2",'WT1','BMX', 'CGRP', 'ASCL1','PROX1','MUC5AC','MUC5B','EPCAM')
immunegens <- c('PTPRC','CD68','PTPRC','LTB','CD69','CD79B','CD8B','CD8A','CD3G','CD27','CD2','CD96','CCL5','LAT','CD1E','CCL17','CCR6','CD1C','PLD4','CALB2','SLC18A2','HDC','SVOPL','KIT','FPR2','KLRF1','SH2D1B','MYOM2','TMIGD2','CD160','NCR3')
Morriseylab/scExtras documentation built on July 10, 2024, 6:41 a.m.
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markergenes=c('TM4SF1','KLF5','TFCP2L1','KRT17','ABCA3','CXCL14', 'SCGB3A2','SCGB1A1','SFTPC','MSMB',
'FOXJ1','PTPRC',"VWF",'PECAM1','PDGFRB','CD68','AGER','PDGFRA','HEY2','KRT5',"STC1","MFAP5",
"DCN","ACTA2","WNT2","AXIN2","SPOCK2",'WT1','BMX', 'CGRP', 'ASCL1','PROX1','MUC5AC','MUC5B','EPCAM')
immunegens <- c('PTPRC','CD68','PTPRC','LTB','CD69','CD79B','CD8B','CD8A','CD3G','CD27','CD2','CD96','CCL5','LAT','CD1E','CCL17','CCR6','CD1C','PLD4','CALB2','SLC18A2','HDC','SVOPL','KIT','FPR2','KLRF1','SH2D1B','MYOM2','TMIGD2','CD160','NCR3')
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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