parse_loc_object: more flexible parsing of single cell objects

In NCBI-Hackathons/RClusterCT: Classifier for Single-cell RNA-seq Using Cell Clusters

more flexible parsing of single cell objects

Description

more flexible parsing of single cell objects

Usage

parse_loc_object(
  input,
  type = class(input),
  expr_loc = NULL,
  meta_loc = NULL,
  var_loc = NULL,
  cluster_col = NULL,
  lookuptable = NULL
)

Arguments

input	input object
type	look up predefined slots/loc
expr_loc	function that extracts expression matrix
meta_loc	function that extracts metadata
var_loc	function that extracts variable genes
cluster_col	column of clustering from metadata
lookuptable	if not supplied, will use object_loc_lookup() for parsing.

Value

list of expression, metadata, vargenes, cluster_col info from object

Examples

so <- so_pbmc()
obj <- parse_loc_object(so)
length(obj)

NCBI-Hackathons/RClusterCT documentation built on Aug. 30, 2024, 2:05 a.m.