plot_call: Plot called clusters on a tSNE or umap, for each reference...

In NCBI-Hackathons/RClusterCT: Classifier for Single-cell RNA-seq Using Cell Clusters

Plot called clusters on a tSNE or umap, for each reference cluster given

Description

Plot called clusters on a tSNE or umap, for each reference cluster given

Usage

plot_call(cor_mat, metadata, data_to_plot = colnames(cor_mat), ...)

Arguments

cor_mat	input similarity matrix
metadata	input metadata with tsne or umap coordinates and cluster ids
data_to_plot	colname of data to plot, defaults to all
...	passed to plot_dims

Value

list of ggplot object, cells projected by dr, colored by cell type classification

NCBI-Hackathons/RClusterCT documentation built on Aug. 30, 2024, 2:05 a.m.