Files in PF2-pasteur-fr/SARTools
Statistical Analysis of RNA-Seq Tools
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/BCVPlot.R
R/MAPlot.R
R/MDSPlot.R
R/NAMESPACE.R
R/PCAPlot.R
R/SARTools-package.r
R/SERE.r
R/barplotNull.R
R/barplotTotal.R
R/cairoSizeWrapper.R
R/checkParameters.DESeq2.r
R/checkParameters.edgeR.r
R/clusterPlot.R
R/countsBoxplots.R
R/densityPlot.R
R/descriptionPlots.r
R/diagSizeFactorsPlots.R
R/dispersionsPlot.R
R/exploreCounts.R
R/exportResults.DESeq2.R
R/exportResults.edgeR.R
R/loadCountData.R
R/loadTargetFile.R
R/majSequences.R
R/nDiffTotal.r
R/pairwiseScatterPlots.R
R/rawpHist.R
R/removeNull.R
R/run.DESeq2.r
R/run.edgeR.r
R/summarizeResults.DESeq2.r
R/summarizeResults.edgeR.r
R/tabIndepFiltering.R
R/tabSERE.R
R/volcanoPlot.r
R/welcome.R
R/writeReport.DESeq2.r
R/writeReport.edgeR.r
README.md
inst/CITATION
inst/bibliography.bib
inst/medecine-sciences.csl
inst/raw/KO1.htseq.out
inst/raw/KO2.htseq.out
inst/raw/WT1.htseq.out
inst/raw/WT2.htseq.out
inst/report_DESeq2.rmd
inst/report_edgeR.rmd
inst/target.txt
man/BCVPlot.Rd
man/MAPlot.Rd
man/MDSPlot.Rd
man/PCAPlot.Rd
man/SARTools-package.Rd
man/SERE.Rd
man/barplotNull.Rd
man/barplotTotal.Rd
man/cairoSizeWrapper.Rd
man/checkParameters.DESeq2.Rd
man/checkParameters.edgeR.Rd
man/clusterPlot.Rd
man/countsBoxplots.Rd
man/densityPlot.Rd
man/descriptionPlots.Rd
man/diagSizeFactorsPlots.Rd
man/dispersionsPlot.Rd
man/exploreCounts.Rd
man/exportResults.DESeq2.Rd
man/exportResults.edgeR.Rd
man/loadCountData.Rd
man/loadTargetFile.Rd
man/majSequences.Rd
man/nDiffTotal.Rd
man/pairwiseScatterPlots.Rd
man/rawpHist.Rd
man/removeNull.Rd
man/run.DESeq2.Rd
man/run.edgeR.Rd
man/summarizeResults.DESeq2.Rd
man/summarizeResults.edgeR.Rd
man/tabIndepFiltering.Rd
man/tabSERE.Rd
man/volcanoPlot.Rd
man/writeReport.DESeq2.Rd
man/writeReport.edgeR.Rd
template_script_DESeq2.r
template_script_DESeq2_CL.r
template_script_edgeR.r
template_script_edgeR_CL.r
vignettes/SARTools.rmd
vignettes/figures/batchclusterPCA.png
vignettes/figures/diagSF.png
vignettes/figures/inversionclusterPCA.png
vignettes/figures/inversionpairwiseScatter.png
vignettes/figures/inversionrawpHist.png
vignettes/figures/outlierPCA.png
vignettes/figures/outlierbarplots.png
