plotMultiLevelLabels: Plot significant labels across heirarchy

In PFPrzytycki/CellWalkR: An R Package for Integrating and Visualizing Single-Cell and Bulk Data to Resolve Regulatory Elements

Plot significant labels across heirarchy

Description

plotMultiLevelLabels() Plots labels across heirarchy for bulk data by mapping them via the calculated information matrix

Usage

plotMultiLevelLabels(cellWalk, labelScores, z = 2, whichBulk)

Arguments

cellWalk	a cellWalk object
labelScores	a matrix of label scores, output of labelBulk with allScores set to TRUE
z	numeric z-score threshold for significance
whichBulk,	numeric optionally identify which bulk peak to plot

Value

plot object p of either counts of signifcant labels or enrichment/depletion for single peak

Examples

data("SampleCellWalkRData")
cellWalk <- clusterLabels(SampleCellWalkRData$cellWalk)
## Not run: p <- plotMultiLevelLabels(cellWalk,SampleCellWalkRData$labelScores)

PFPrzytycki/CellWalkR documentation built on Oct. 26, 2023, 1:50 p.m.