scoreDoublets: Score doublets

In PFPrzytycki/CellWalkR: An R Package for Integrating and Visualizing Single-Cell and Bulk Data to Resolve Regulatory Elements

Score doublets

Description

scoreDoublets() generates an l-by-l matrix for how often each label is confused for each other label at a given threshold, optinally normalized for total counts of cells for each label (default FALSE)

Usage

scoreDoublets(cellWalk, plot = FALSE, embedding = "tSNE")

Arguments

cellWalk	a cellWalk object
plot	boolean, optionally plot doublet scores in embedding space
embedding	method with which to embed data, either "tSNE" or "UMAP"

Value

cellWalk object with vector of doublet scores stored in "doubletScore"

Examples

data("SampleCellWalkRData")
cellWalk <- scoreDoublets(SampleCellWalkRData$cellWalk)

PFPrzytycki/CellWalkR documentation built on Oct. 26, 2023, 1:50 p.m.