getRegions: Get genomic regions

In PFPrzytycki/CellWalkR: An R Package for Integrating and Visualizing Single-Cell and Bulk Data to Resolve Regulatory Elements

Get genomic regions

Description

getRegions returns a GRanges object of how gene name identifiers map to genomic regions either based on gene promoters or the full gene body

Usage

getRegions(geneBody = TRUE, genome = "hg38", names = "Entrez")

Arguments

geneBody	boolean, use gene body or just promoter
genome	which genome build (hg38, mm10)
names	which gene names to use (Entrez, Ensembl)

Value

GRanges list of regions with gene_id

Examples

getRegions()

PFPrzytycki/CellWalkR documentation built on Oct. 26, 2023, 1:50 p.m.