mapSnapATACToGenes: Map SnapATAC peaks to genes

In PFPrzytycki/CellWalkR: An R Package for Integrating and Visualizing Single-Cell and Bulk Data to Resolve Regulatory Elements

Map SnapATAC peaks to genes

Description

mapSnapATACToGenes Generates a mapping from genes to peaks per label

Usage

mapSnapATACToGenes(labelGenes, snap, whichMat = "bmat", regions)

Arguments

labelGenes	data.frame with genes of interest in first column and corresponding labels in second column
snap	a snap object
whichMat	string determing whether to use "bmat" or "gmat" from snap object
regions	GRanges object of genomic regions associated with genes (only needed for "bmat")

Value

list of genes and corresponding peaks by label

PFPrzytycki/CellWalkR documentation built on Oct. 26, 2023, 1:50 p.m.