storeBulk: Store bulk label data

In PFPrzytycki/CellWalkR: An R Package for Integrating and Visualizing Single-Cell and Bulk Data to Resolve Regulatory Elements

Store bulk label data

Description

storeBulk() stores labels for bulk data in the cellWalk object

Usage

storeBulk(cellWalk, bulkPeaks, labelScores, bulkID)

Arguments

cellWalk	a cellWalk object
bulkPeaks	GRanges of peaks in bulk data or GRangesList of sets of peaks
labelScores	a matrix of label scores, output of labelBulk with allScores set to TRUE
bulkID	character string assigning name to bulk data

Value

cellWalk object with labels for each region in bulk data

Examples

data("SampleCellWalkRData")
cellWalk <- storeBulk(SampleCellWalkRData$cellWalk,
                      SampleCellWalkRData$sampleEnhancers,
                      SampleCellWalkRData$labelScores)

PFPrzytycki/CellWalkR documentation built on Oct. 26, 2023, 1:50 p.m.