PFPrzytycki/CellWalkR: An R Package for Integrating and Visualizing Single-Cell and Bulk Data to Resolve Regulatory Elements

CellWalkR is an R package that integrates single-cell open chromatin (scATAC-seq) data with cell type labels and bulk epigenetic data to identify cell type-specific regulatory regions. A GPU implementation and downsampling strategies enable thousands of cells to be processed in seconds. CellWalkR’s user-friendly interface provides interactive analysis and visualization of cell labels and regulatory region mappings.

install.packages("remotes")
remotes::install_github("PFPrzytycki/CellWalkR")