PFPrzytycki/CellWalkR: An R Package for Integrating and Visualizing Single-Cell and Bulk Data to Resolve Regulatory Elements

CellWalkR is an R package that integrates single-cell open chromatin (scATAC-seq) data with cell type labels and bulk epigenetic data to identify cell type-specific regulatory regions. A GPU implementation and downsampling strategies enable thousands of cells to be processed in seconds. CellWalkR’s user-friendly interface provides interactive analysis and visualization of cell labels and regulatory region mappings.

Getting started

Package details

Bioconductor views ATACSeq SingleCell Software
LicenseGPL-2 + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
PFPrzytycki/CellWalkR documentation built on Oct. 26, 2023, 1:50 p.m.