API for RajLabMSSM/echofinemap
echoverse module: Fine-mapping functions
| Global functions | |
|---|---|
| .onLoad | Source code |
| ABF | Man page Source code |
| COJO | Man page Source code |
| COJO_args | Man page Source code |
| COJO_check_version | Source code |
| COJO_find_executable | Man page Source code |
| COJO_get_conditional_results | Source code |
| COJO_get_stepwise_results | Man page Source code |
| COJO_list_files | Source code |
| COJO_locus_subdir | Man page Source code |
| COJO_process_results | Man page Source code |
| COJO_run | Man page Source code |
| FINEMAP | Man page Source code |
| FINEMAP_check_existing_results | Source code |
| FINEMAP_check_files | Source code |
| FINEMAP_check_version | Source code |
| FINEMAP_check_version_results | Source code |
| FINEMAP_construct_data | Man page Source code |
| FINEMAP_construct_datak | Source code |
| FINEMAP_construct_master | Man page Source code |
| FINEMAP_find_executable | Man page Source code |
| FINEMAP_import_data_config | Source code |
| FINEMAP_import_data_cred | Source code |
| FINEMAP_import_data_snp | Source code |
| FINEMAP_import_log | Man page Source code |
| FINEMAP_process_results | Man page Source code |
| FINEMAP_run | Source code |
| PAINTOR | Man page Source code |
| PAINTOR_check_ld | Source code |
| PAINTOR_check_required_cols | Source code |
| PAINTOR_check_superpopulation | Source code |
| PAINTOR_check_version | Source code |
| PAINTOR_create_locus_file | Man page Source code |
| PAINTOR_dat_to_list | Source code |
| PAINTOR_datatype_handler | Man page Source code |
| PAINTOR_download_annotations | Man page Source code |
| PAINTOR_find_executable | Source code |
| PAINTOR_find_folder | Source code |
| PAINTOR_get_suffixes | Source code |
| PAINTOR_help | Source code |
| PAINTOR_input_file | Source code |
| PAINTOR_install | Man page Source code |
| PAINTOR_is_installed | Source code |
| PAINTOR_merge_datasets | Source code |
| PAINTOR_prepare_annotations | Man page Source code |
| PAINTOR_prepare_ld_multiancestry | Man page Source code |
| PAINTOR_process_results | Man page Source code |
| PAINTOR_run | Man page Source code |
| PAINTOR_sample_data | Man page Source code |
| POLYFUN | Man page Source code |
| POLYFUN_check_method | Source code |
| POLYFUN_check_mode | Source code |
| POLYFUN_check_version | Man page Source code |
| POLYFUN_compute_priors | Man page Source code |
| POLYFUN_download_ref_files | Man page Source code |
| POLYFUN_example_data | Source code |
| POLYFUN_find_folder | Man page Source code |
| POLYFUN_finemapper | Man page Source code |
| POLYFUN_gather_annot_proportions | Source code |
| POLYFUN_gather_annotations | Man page Source code |
| POLYFUN_gather_ldscores | Man page Source code |
| POLYFUN_get_ref_prefix | Source code |
| POLYFUN_help | Man page Source code |
| POLYFUN_import_priors | Man page Source code |
| POLYFUN_import_priors_handler | Source code |
| POLYFUN_initialize | Man page Source code |
| POLYFUN_install | Man page Source code |
| POLYFUN_munge_summ_stats | Man page Source code |
| POLYFUN_prepare_snp_input | Man page Source code |
| POLYFUN_read_priors | Man page Source code |
| POLYFUN_run_ldsc | Man page Source code |
| POLYFUN_sample_size_arg | Source code |
| SUSIE | Man page Source code |
| SUSIE_args_intrepreter | Source code |
| SUSIE_check_args | Source code |
| SUSIE_extract_cs | Source code |
| SUSIE_get_func | Man page Source code |
| SUSIE_plot_track | Source code |
| SUSIE_run | Man page Source code |
| Zscore | Source code |
| Zscore_sumstats | Source code |
| check_args | Man page Source code |
| check_required_cols | Man page Source code |
| collapse_args | Source code |
| create_method_path | Man page Source code |
| drop_finemap_cols | Man page Source code |
| exists_not_empty | Source code |
| finemap_args_interpreter | Source code |
| get_data | Man page Source code |
| get_pheno_variance | Man page Source code |
| install_submodule_git | Man page Source code |
| is_32bit | Man page Source code |
| lfm | Man page |
| list_finemap_methods | Source code |
| messager | Source code |
| multifinemap | Man page Source code |
| multifinemap_handler | Man page Source code |
| multifinemap_handler_method | Man page Source code |
| normalize_priors | Source code |
| prepare_priors | Man page Source code |
| preview_data | Source code |
| rbind_filelist | Man page Source code |
| remove_dup_snps | Man page Source code |
| remove_na_rows | Man page Source code |
| required_cols | Man page Source code |
| save_finemap_results | Source code |
| setup_gcc | Man page Source code |
