Converts genomic data files to tabix format (including liftover, sorting, compression, and indexing steps) with a single function. Retrieves local or remote tabix VCF/tabular files with helper functions for creating queries from subsets of genomic data (e.g GWAS/QTL loci, genomic ranges). Multiple methods available at each step, including wrapper functions for an up-to-date, `conda`-based installation of `htslib` tools.
Package details |
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Maintainer | |
License | GPL (>= 3) |
Version | 0.99.10 |
URL | https://github.com/RajLabMSSM/echotabix |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
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