RajLabMSSM/echotabix: echoverse module: automated creation and querying of tabix files

Converts genomic data files to tabix format (including liftover, sorting, compression, and indexing steps) with a single function. Retrieves local or remote tabix VCF/tabular files with helper functions for creating queries from subsets of genomic data (e.g GWAS/QTL loci, genomic ranges). Multiple methods available at each step, including wrapper functions for an up-to-date, `conda`-based installation of `htslib` tools.

Getting started

Package details

Maintainer
LicenseGPL (>= 3)
Version0.99.10
URL https://github.com/RajLabMSSM/echotabix
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("RajLabMSSM/echotabix")
RajLabMSSM/echotabix documentation built on Nov. 21, 2023, 8:02 a.m.