select_method: Select method

In RajLabMSSM/echotabix: echoverse module: automated creation and querying of tabix files

Select method

Description

Select a valid alternative method when the one chosen is not compatible with the current Bioconductor version. When provided a valid method, simply reutrns that method.

Usage

select_method(
  fn,
  fn_arg = "method",
  method,
  rhtslib_pkgs = c("variantannotation", "rsamtools", "rtracklayer"),
  verbose = TRUE
)

Arguments

fn	Unevaluated function to select method for.
fn_arg	Name of the argument that lists the various methods available for that particular function.
method	Method selected by user.
rhtslib_pkgs	List of R packages that depend on Rhtslib.
verbose	Print messages.

Value

A valid method.

RajLabMSSM/echotabix documentation built on Nov. 21, 2023, 8:02 a.m.