rhtslib_warning: 'Rsamtools' warning

In RajLabMSSM/echotabix: echoverse module: automated creation and querying of tabix files

Rsamtools warning

Description

Warn users about outdated version of htslib used by older versions of the Rhtslib R package.

Usage

rhtslib_warning(
  rhtslib_pkgs = c("variantannotation", "rsamtools", "rtracklayer"),
  method = NULL,
  verbose = TRUE
)

Arguments

rhtslib_pkgs	List of R packages that depend on Rhtslib.
method	Method requested.
verbose	Print messages.

Value

Whether the Bioc version is invalid for this function.

Source

Rsamtools/Rhtslib updates

Rhtslib<1.99.2 (which Rsamtools and seqminer depend on for tabix) is very out of date (uses htslib 1.7 vs. 1.15).

Rsamtools: GitHub

Rsamtools: Bioconductor

RajLabMSSM/echotabix documentation built on Nov. 21, 2023, 8:02 a.m.