index_rsamtools: Tabix-index a file: Rsamtools

In RajLabMSSM/echotabix: echoverse module: automated creation and querying of tabix files

Tabix-index a file: Rsamtools

Description

Tabix-index a tabular summary statistics file.

Usage

index_rsamtools(
  bgz_file,
  chrom_i,
  start_i,
  end_i,
  comment_char,
  skip = 0L,
  zeroBased = FALSE,
  verbose = TRUE,
  ...
)

Arguments

bgz_file	Path to a file that has been compressed with bgzip (e.g. via run_bgzip).
comment_char	Comment character denoting which row contains the column names (e.g. "#CHR" or "SNP").
verbose	Print messages.

RajLabMSSM/echotabix documentation built on Nov. 21, 2023, 8:02 a.m.