filter_vcf_query_samples: Filter VCF query samples
In RajLabMSSM/echotabix: echoverse module: automated creation and querying of tabix files
View source: R/filter_vcf_samples.R
filter_vcf_query_samples R Documentation
Filter VCF query samples
Description
Only include certain samples in a VCF query.
If at least one sample is supplied, returns
a ScanVcfParam.
Otherwise, returns the original GRanges object
(gr).
Usage
filter_vcf_query_samples(gr, samples = character(), verbose = TRUE)
Arguments
gr
A GRanges object
generated by construct_query.
samples
[Optional] Sample names to subset the VCF by.
If this option is used, the GRanges object will be
converted to a ScanVcfParam for usage by
readVcf.
verbose
Print messages.
Value
GRanges or
ScanVcfParam object.
RajLabMSSM/echotabix documentation built on Nov. 21, 2023, 8:02 a.m.
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View source: R/filter_vcf_samples.R
| filter_vcf_query_samples | R Documentation |
Filter VCF query samples
Description
Only include certain samples in a VCF query.
If at least one sample is supplied, returns
a ScanVcfParam.
Otherwise, returns the original GRanges object
(gr).
Usage
filter_vcf_query_samples(gr, samples = character(), verbose = TRUE)
Arguments
gr |
A GRanges object generated by construct_query. |
samples |
[Optional] Sample names to subset the VCF by. If this option is used, the GRanges object will be converted to a ScanVcfParam for usage by readVcf. |
verbose |
Print messages. |
Value
GRanges or ScanVcfParam object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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