run_gunzip_conda: Run gunzip: conda

In RajLabMSSM/echotabix: echoverse module: automated creation and querying of tabix files

Run gunzip: conda

Description

Support function for run_gunzip.

Usage

run_gunzip_conda(
  path,
  gunzip_ex = NULL,
  outputs = c("command", "path", "data"),
  save_path = gsub(".gz|.bgz", "", path),
  conda_env = "echoR_mini",
  verbose = TRUE
)

Arguments

path	Path to file.
outputs	"command"Text string of the command (without executing it.) "path"Path to the saved data file. "data"The resulting data in data.table format.
save_path	File to save the results to.
conda_env	Conda environments to search in. If NULL (default), will search all conda environments.
verbose	Print messages.

RajLabMSSM/echotabix documentation built on Nov. 21, 2023, 8:02 a.m.