construct_tabix_path: Construct tabix path

In RajLabMSSM/echotabix: echoverse module: automated creation and querying of tabix files

Construct tabix path

Description

Given some summary stats file, construct a name for the resulting sorted, bgzip-compressed tabix file.

Usage

construct_tabix_path(target_path, study_dir = NULL)

Arguments

target_path	Path to full GWAS/QTL summary statistics file.
study_dir	[optional] Path to study-specific subfolder.

See Also

Other tabix functions: construct_vcf_path(), convert(), index, query_table(), query_vcf(), read_bgz(), run_bgzip()

Examples

bgz_file <- echotabix::construct_tabix_path(
    target_path = "mysumstatsfile.vcf.tsv.gz")

RajLabMSSM/echotabix documentation built on Nov. 21, 2023, 8:02 a.m.