index_conda: Tabix-index a file: conda

In RajLabMSSM/echotabix: echoverse module: automated creation and querying of tabix files

Tabix-index a file: conda

Description

Tabix-index a tabular summary statistics file.

Usage

index_conda(
  bgz_file,
  chrom_i,
  start_i,
  end_i,
  comment_char,
  skip_lines = 0,
  force_new = FALSE,
  conda_env = "echoR_mini",
  verbose = TRUE
)

Arguments

bgz_file	Path to a file that has been compressed with bgzip (e.g. via run_bgzip).
comment_char	Comment character denoting which row contains the column names (e.g. "#CHR" or "SNP").
force_new	Force the creation of a new bgzip file (.bgz) and a new tabix index file (.tbi).
conda_env	Conda environments to search in. If NULL (default), will search all conda environments.
verbose	Print messages.

RajLabMSSM/echotabix documentation built on Nov. 21, 2023, 8:02 a.m.