query_table_genomicfiles: Query tabular: 'GenomicFiles'

View source: R/query_table_genomicfiles.R

query_table_genomicfilesR Documentation

Query tabular: GenomicFiles

Description

GenomicFiles can query both local and remote files.

Usage

query_table_genomicfiles(
  target_path,
  target_index = paste0(target_path, ".tbi"),
  query_granges,
  yieldSize = NA_character_,
  verbose = TRUE
)

Arguments

target_path

Path to tabix file.

target_index

Tabix index file for target_path.

query_granges

GRanges object to be used for querying the target_path file. Alternatively, can be variant-level summary statistics to be converted into a GRanges object by construct_query.

verbose

Print messages.


RajLabMSSM/echotabix documentation built on Nov. 21, 2023, 8:02 a.m.