get_chain_file: Download chain file for liftover

In RajLabMSSM/echotabix: echoverse module: automated creation and querying of tabix files

Download chain file for liftover

Description

Download chain file for liftover

Usage

get_chain_file(
  build_conversion = c("hg38ToHg19", "hg19ToHg38"),
  save_dir = tools::R_user_dir(package = "echotabix", which = "cache"),
  timeout = 60 * 5,
  verbose = TRUE
)

Arguments

build_conversion	Converting from what build to what? "hg38ToHg19" or "hg19ToHg38"
save_dir	Where is the chain file saved? Default is a temp directory
verbose	extra messages printed? Default is TRUE

Value

Loaded chain file for liftover.

Source

UCSC chain files

See Also

Other liftover functions: liftover()

RajLabMSSM/echotabix documentation built on Nov. 21, 2023, 8:02 a.m.