structure.plot: structure community plots

In RenaudJau/Renaudpack2: Un fourre tout de mes fonctions...

structure community plots

Description

Performs a barplot of abundances of species in assessed community compared to a REFerence community

Usage

structure.plot(
  INDICE,
  FACTOR,
  MULTI = T,
  MTITLE = "",
  ABMAX = 5,
  col1 = "grey60",
  col2 = "white",
  col3 = "red",
  col4 = "orange",
  noms = "T",
  cex_noms = 1,
  ...
)

Arguments

INDICE	An object issued from ComStructIndices function
FACTOR	A factor list, a barplot of species mean abundances will be performed for each factor level. If no factor is specified, MULTI=F should be specified.
MULTI	If no factor is specified, MULTI=F should be specified
MTITLE	Main title of the plot
ABMAX	Numerical value of the maximum abundance
col1	Colour information for the Reference mean abundances barplot
col2	Colour information for the Reference mean abundances in assessed community barplot, i.e. "missing abundances"
col3	Colour information for the abundances of target species in the assessed community
col4	Colour information for the "higher abundances" in the assessed community
noms	If other than "T", species names are not given
cex_noms	expansion factor for species names
...	other parameters from the barplot function

See Also

ComStructIndices

RenaudJau/Renaudpack2 documentation built on Feb. 16, 2025, 7:33 p.m.