structure.plot: structure community plots

Description Usage Arguments See Also

View source: R/ScriptFonctionsSourcesVpack.r

Description

Performs a barplot of abundances of species in assessed community compared to a REFerence community

Usage

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structure.plot(
  INDICE,
  FACTOR,
  MULTI = T,
  MTITLE = "",
  ABMAX = 5,
  col1 = "grey60",
  col2 = "white",
  col3 = "red",
  col4 = "orange",
  noms = "T",
  cex_noms = 1,
  ...
)

Arguments

INDICE

An object issued from ComStructIndices function

FACTOR

A factor list, a barplot of species mean abundances will be performed for each factor level. If no factor is specified, MULTI=F should be specified.

MULTI

If no factor is specified, MULTI=F should be specified

MTITLE

Main title of the plot

ABMAX

Numerical value of the maximum abundance

col1

Colour information for the Reference mean abundances barplot

col2

Colour information for the Reference mean abundances in assessed community barplot, i.e. "missing abundances"

col3

Colour information for the abundances of target species in the assessed community

col4

Colour information for the "higher abundances" in the assessed community

noms

If other than "T", species names are not given

cex_noms

expansion factor for species names

...

other parameters from the barplot function

See Also

ComStructIndices


RenaudJau/Renaudpack2 documentation built on Dec. 12, 2020, 5:14 a.m.