addCellIntMetadata | R Documentation |
Creates an additional metadata column with information about interacting and non-interacting cell types of the selected cell-cell interaction.
addCellIntMetadata(
gobject,
spatial_network = "spatial_network",
cluster_column,
cell_interaction,
name = "select_int",
return_gobject = TRUE
)
gobject |
giotto object |
spatial_network |
name of spatial network to use |
cluster_column |
column of cell types |
cell_interaction |
cell-cell interaction to use |
name |
name for the new metadata column |
return_gobject |
return an updated giotto object |
This function will create an additional metadata column which selects interacting cell types for a specific cell-cell interaction. For example, if you want to color interacting astrocytes and oligodendrocytes it will create a new metadata column with the values "select_astrocytes", "select_oligodendrocytes", "other_astrocytes", "other_oligodendroyctes" and "other". Where "other" is all other cell types found within the selected cell type column.
Giotto object
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.