cell_proximity_spots: cell_proximity_spots
In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox
View source: R/spatial_interaction_spot.R
cell_proximity_spots R Documentation
cell_proximity_spots
Description
Compute cell-cell interactions observed value for internal and external spots
Usage
cell_proximity_spots(cell_IDs, pairs_external, dwls_values)
Arguments
cell_IDs
cell_IDs to calculate internal cell-type/cell-type interactions
dwls_values
data.table of cell type enrichment in each spot and multiply
by cell number in each spot
pairs
data.table of paired spots. Format: cell_ID1, cell_ID2, N
Value
List of cell proximity observed value in data.table format. Columns:
unified_int, type_int, V1, external, internal.
RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.
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View source: R/spatial_interaction_spot.R
| cell_proximity_spots | R Documentation |
cell_proximity_spots
Description
Compute cell-cell interactions observed value for internal and external spots
Usage
cell_proximity_spots(cell_IDs, pairs_external, dwls_values)
Arguments
cell_IDs |
cell_IDs to calculate internal cell-type/cell-type interactions |
dwls_values |
data.table of cell type enrichment in each spot and multiply by cell number in each spot |
pairs |
data.table of paired spots. Format: cell_ID1, cell_ID2, N |
Value
List of cell proximity observed value in data.table format. Columns: unified_int, type_int, V1, external, internal.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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