View source: R/spatial_interaction_visuals.R
cellProximityHeatmap | R Documentation |
Create heatmap from cell-cell proximity scores
cellProximityHeatmap(
gobject,
CPscore,
scale = T,
order_cell_types = T,
color_breaks = NULL,
color_names = NULL,
show_plot = NA,
return_plot = NA,
save_plot = NA,
save_param = list(),
default_save_name = "cellProximityHeatmap"
)
gobject |
giotto object |
CPscore |
CPscore, output from cellProximityEnrichment() |
scale |
scale cell-cell proximity interaction scores |
order_cell_types |
order cell types based on enrichment correlation |
color_breaks |
numerical vector of length 3 to represent min, mean and maximum |
color_names |
character color vector of length 3 |
show_plot |
show plot |
return_plot |
return ggplot object |
save_plot |
directly save the plot [boolean] |
save_param |
list of saving parameters from |
default_save_name |
default save name for saving, don't change, change save_name in save_param |
This function creates a heatmap that shows the spatial proximity enrichment or depletion of cell type pairs.
ggplot heatmap
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