anndataToGiotto: anndataToGiotto
In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox
View source: R/interoperability.R
anndataToGiotto R Documentation
anndataToGiotto
Description
Converts a spatial anndata (e.g. scanpy) .h5ad file into a Giotto object
Usage
anndataToGiotto(
anndata_path,
metadata_cols = c("total_counts", "pct_counts_mt"),
instructions = NULL,
...
)
Arguments
anndata_path
path to the .h5ad file
metadata_cols
metadata columns to include
instructions
giotto instructions
...
additional parameters to createGiottoObject
Details
Function in beta. Converts a .h5ad file into a Giotto object.
Value
Giotto object
RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/interoperability.R
| anndataToGiotto | R Documentation |
anndataToGiotto
Description
Converts a spatial anndata (e.g. scanpy) .h5ad file into a Giotto object
Usage
anndataToGiotto(
anndata_path,
metadata_cols = c("total_counts", "pct_counts_mt"),
instructions = NULL,
...
)
Arguments
anndata_path |
path to the .h5ad file |
metadata_cols |
metadata columns to include |
instructions |
giotto instructions |
... |
additional parameters to |
Details
Function in beta. Converts a .h5ad file into a Giotto object.
Value
Giotto object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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