average_gene_gene_expression_in_groups: average_gene_gene_expression_in_groups

In RubD/Giotto: Spatial Single-Cell Transcriptomics Toolbox

average_gene_gene_expression_in_groups

Description

calculate average expression per cluster

Usage

average_gene_gene_expression_in_groups(
  gobject,
  cluster_column = "cell_types",
  gene_set_1,
  gene_set_2
)

Arguments

gobject	giotto object to use
cluster_column	cluster column with cell type information
gene_set_1	first specific gene set from gene pairs
gene_set_2	second specific gene set from gene pairs

Value

data.table with average expression scores for each cluster

RubD/Giotto documentation built on April 29, 2023, 5:52 p.m.