addStatistics | R Documentation |
adds genes and cells statistics to the giotto object
addStatistics(
gobject,
expression_values = c("normalized", "scaled", "custom"),
detection_threshold = 0,
return_gobject = TRUE
)
gobject |
giotto object |
expression_values |
expression values to use |
detection_threshold |
detection threshold to consider a gene detected |
return_gobject |
boolean: return giotto object (default = TRUE) |
See addGeneStatistics
and addCellStatistics
giotto object if return_gobject = TRUE, else a list with results
data(mini_giotto_single_cell)
updated_giotto_object = addStatistics(mini_giotto_single_cell)
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