summary.DA: Summary of results from 'testDA'

In Russel88/DAtest: Comparing Differential Abundance/Expression Methods

Summary of results from testDA

Description

Summary of results from testDA

Usage

## S3 method for class 'DA'
summary(
  object,
  sort = "Score",
  boot = TRUE,
  prob = c(0.05, 0.95),
  N = 1000,
  decimals = 2,
  ...
)

Arguments

object	The output from the testDA function
sort	Sort methods by c("AUC","FPR","Power","Score")
boot	If TRUE will use bootstrap for confidence limits of the Score, else will compute the limits from the original table. Recommended to be TRUE unless R >= 100 in testDA
prob	Confidence limits for Score. Default 90% = c(0.05,0.095)
N	Number of bootstraps. Default 1000
decimals	Precision in output. Default 2
...	Additional arguments for print

Value

Prints summary from the DAtest function. '*' next to method, means that it's median score is overlapping with the 90

Russel88/DAtest documentation built on March 24, 2022, 3:50 p.m.