RegressHaploSolutions: Loads a set of solutions created by solutions.RegressHaplo

In SLeviyang/RegressHaplo: Haplotype Reconstruction Using Penalized Regression

Loads a set of solutions created by solutions.RegressHaplo

Description

Loads a set of solutions created by solutions.RegressHaplo

Usage

RegressHaploSolutions(solutions, h, Igor = F)

Arguments

solutions	Output from solutions.RegressHaplo
h	Haplotypes used to construct the y and P matrix used in generating solutions
Igor	For now Igor's format and mine are slightly different!

Value

A list containing the entries df_stats, df_p, read_df, founder_df, h_full, and results. df_stats is a data.frame containing the columns run_id, rho, K, Igor_K, fit. m_p is a matrix with rows p1, ..., pn; see parse_Igor_csv_to_df.IgorResults for further details. read_df and founder_df are the read_table for the dataset and founder table for the animal, respectively. h_full is the collection of hapltypes corresponding to the entries of p. results is a list, with an entry for each row of results_df, i.e. each optimization. Each entry of results is a list containing h (haplotype matrix), pi (haplotype frequencies), and fit.

SLeviyang/RegressHaplo documentation built on June 1, 2022, 10:48 p.m.