position_pairs.error: Get position pairs with threshold coverage
In SLeviyang/RegressHaplo: Haplotype Reconstruction Using Penalized Regression
position_pairs.error R Documentation
Get position pairs with threshold coverage
Description
Get position pairs with threshold coverage
Usage
position_pairs.error(out_dir, max_pair_distance = 200, minimum_coverage = 1000)
Arguments
out_dir
directory in which to find pair_comparison_read_table
max_pair_distance
maximum distance to allow between pairs
minimum_coverage
minimum numbers of reads covering a pair
Value
a data.frame with columns pos1, pos2 giving the positions of the pairs
SLeviyang/RegressHaplo documentation built on June 1, 2022, 10:48 p.m.
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| position_pairs.error | R Documentation |
Get position pairs with threshold coverage
Description
Get position pairs with threshold coverage
Usage
position_pairs.error(out_dir, max_pair_distance = 200, minimum_coverage = 1000)
Arguments
out_dir |
directory in which to find pair_comparison_read_table |
max_pair_distance |
maximum distance to allow between pairs |
minimum_coverage |
minimum numbers of reads covering a pair |
Value
a data.frame with columns pos1, pos2 giving the positions of the pairs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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