template_alleles.read_table: Return all alleles matching a read template
In SLeviyang/RegressHaplo: Haplotype Reconstruction Using Penalized Regression
template_alleles.read_table R Documentation
Return all alleles matching a read template
Description
Return all alleles matching a read template
Usage
template_alleles.read_table(template, df, match = F)
Arguments
template
A logical vector
df
a read table
match
if T then only return alleles that comprise
an entire read. if F then return all alleles that comprise
any subsequence of a read.
Details
a template is a logical vector of length
equal to the number of positions in the read table
and with T corresponding to nucleotide positions that are
part of the template.
Value
A named numeric vector with entries giving allele counts
and names giving alleles
SLeviyang/RegressHaplo documentation built on June 1, 2022, 10:48 p.m.
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| template_alleles.read_table | R Documentation |
Return all alleles matching a read template
Description
Return all alleles matching a read template
Usage
template_alleles.read_table(template, df, match = F)
Arguments
template |
A logical vector |
df |
a read table |
match |
if T then only return alleles that comprise an entire read. if F then return all alleles that comprise any subsequence of a read. |
Details
a template is a logical vector of length equal to the number of positions in the read table and with T corresponding to nucleotide positions that are part of the template.
Value
A named numeric vector with entries giving allele counts and names giving alleles
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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