drawEdgeListHeatMap: Draws a heatmap with dendrogram of a module in the netework.

In SystemsGenetics/KINC.R: Provides additional functions for network files created using KINC.

Description

Draws a heatmap with dendrogram of a module in the netework.

Usage

drawEdgeListHeatMap(edge_indexes, osa, net, fieldOrder)

Arguments

edge_indexes	The index of the edges in the network that comprise the module.
osa	The sample annotation matrix. One column must contain the header 'Sample' and the remaining colums correspond to an annotation type. The rows of the anntation columns should contain the annotations.
net	A network data frame containing the KINC-produced network. The loadNetwork function imports a dataframe in the correct format for this function.
fieldOrder	A vector containing a list of sample attribute names for reordering of of the samples. Each element of this vector should be the name of a column in the osa matrix. The sorting occurs first by the first element, then by the second, etc.

SystemsGenetics/KINC.R documentation built on Nov. 10, 2021, 9:22 p.m.