analyzeNetQuant: Performs significance association for every edge in the...

In SystemsGenetics/KINC.R: Provides additional functions for network files created using KINC.

Description

Performs significance association for every edge in the network.

Usage

analyzeNetQuant(
  net,
  osa,
  field,
  correction = "hochberg",
  samples = c(),
  progressBar = TRUE
)

Arguments

net	A network data frame containing the KINC-produced network. The loadNetwork function imports a dataframe in the correct format for this function.
osa	The ordered sample annotation data frame.
field	The field in the osa variable on which enrichment will be performed.
samples	Limit the annalysis to only the samples indexes provided.
progressBar	Set to FALSE to repress progress bar
correction.	The method to apply for multiple testing correction. Valid values are identical to those available to the p.adjust function. The default is to apply 'hochberg' correction.

SystemsGenetics/KINC.R documentation built on Nov. 10, 2021, 9:22 p.m.