plot3DEdgeList: Plots a 3D scatterplot for a given list of edges.

In SystemsGenetics/KINC.R: Provides additional functions for network files created using KINC.

Description

Plots a 3D scatterplot for a given list of edges.

Usage

plot3DEdgeList(
  edge_indexes,
  osa,
  net,
  ematrix,
  field,
  label_field = NA,
  samples = NA,
  highlight = TRUE
)

Arguments

edge_indexes	The index of the edge in the network data frame.
osa	The sample annotation matrix. One column must contain the header 'Sample' and the remaining colums correspond to an annotation type. The rows of the anntation columns should contain the annotations.
net	A network data frame containing the KINC-produced network. The loadNetwork function imports a dataframe in the correct format for this function.
ematrix	The expression matrix.
field	The field in the sample annotation matrix by which to split the points into separate layers.
samples	Limit the plot to only the samples indexes provided.
highlight	If set to TRUE then the samples in the edge cluster are drawn larger than the other samples in the plot.

SystemsGenetics/KINC.R documentation built on Nov. 10, 2021, 9:22 p.m.