getSampleMatrix: Generates a matrix containing edge sample strings digits.

In SystemsGenetics/KINC.R: Provides additional functions for network files created using KINC.

Description

The returned matrix contains as many rows as there are edges in the network and as many columns as their are samples. Each column corresponds to a sample in the same order as the sample strings from the network.

Usage

getSampleMatrix(net, strict = TRUE)

Arguments

net	A network data frame containing the KINC-produced network. The loadNetwork function imports a dataframe in the correct format for this function.
strict	If TRUE then all values in the netwrok sample string other than 1 are converted to 0. This means that numeric values indicating missingness or removal as outliers are considered as 0.

Value

An n x m matrix where n is the number of edges and m is the number of samples. The values are the numbers from the sample strings in the network.

SystemsGenetics/KINC.R documentation built on Nov. 10, 2021, 9:22 p.m.