Description Usage Arguments Value
Performs pair-wise Gaussian Mixture Models (GMM) on a pair of genes
1 2 3 4 5 6 7 8 9 10 | getPairGMMEdges(
source,
target,
ematrix,
minc = 30,
method = "spearman",
th = 0.5,
plot = FALSE,
iterations = 5
)
|
source |
The name of the source gene. |
target |
The name of the target gene. |
ematrix |
The expression matrix data frame. |
minc |
The minimum number of samples that must be present to identify a cluster. Default = 30. |
method |
The correlation method to perform (see the cor function for valid options) |
th |
The similarity value threshold. Any correlation value greater than or equal to the absolute value of this number is kept as an edge. Derfault = 0.5. |
plot |
Boolean indicating if the Rmixmod clusters scatterplot should be drawn. Default = FALSE |
iterations |
The number of times to execute the GMM models. The model with the fewest clusters from all the iterations will be used. |
Returns a data frame of edges in the same format as the network returned by the loadNetwork function.
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