plot3DPair: Plots a 3D scatterplot for a given pair of nodes.

In SystemsGenetics/KINC.R: Provides additional functions for network files created using KINC.

Description

Plots a 3D scatterplot for a given pair of nodes.

Usage

plot3DPair(
  gene1,
  gene2,
  osa,
  ematrix,
  field,
  colors = NA,
  samples = NA,
  highlight = c()
)

Arguments

gene1	The name of the first gene in the pair.
gene2	The name of the second gene in the pair.
osa	The sample annotation matrix. One column must contain the header 'Sample' and the remaining colums correspond to an annotation type. The rows of the anntation columns should contain the annotations.
ematrix	The expression matrix.
field	The field in the sample annotation matrix by which to split the points into separate layers.
colors	An array of colors per sample.

SystemsGenetics/KINC.R documentation built on Nov. 10, 2021, 9:22 p.m.