mergeCommunities: Merges linked community clusters that have the most similar...
In SystemsGenetics/KINC.R: Provides additional functions for network files created using KINC.
Description
Usage
Arguments
Details
Value
Description
This merging function recursively iterates through all of the clusters
and performs a pair-wse Jaccard comparision between all clusters.
Those with the highest Jaccard score that are above the given
threshold (i.e. deafult of 0.5) are candidates for merging.
Usage
1
mergeCommunities(lc, th = 0.5)
Arguments
lc
A linkcomm object.
th
Threshold to be used by 'mergeClusters'. Lower threshold results in merging
being more common.
Details
This is a helper function for the findLinkedCommunities() function and is
not meant to be called on its own.
Value
A list were each element of the list is the
set of nodes and edges of the merged clusters.
SystemsGenetics/KINC.R documentation built on Nov. 10, 2021, 9:22 p.m.
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Description Usage Arguments Details Value
Description
This merging function recursively iterates through all of the clusters and performs a pair-wse Jaccard comparision between all clusters. Those with the highest Jaccard score that are above the given threshold (i.e. deafult of 0.5) are candidates for merging.
Usage
1 | mergeCommunities(lc, th = 0.5)
|
Arguments
lc |
A linkcomm object. |
th |
Threshold to be used by 'mergeClusters'. Lower threshold results in merging being more common. |
Details
This is a helper function for the findLinkedCommunities() function and is not meant to be called on its own.
Value
A list were each element of the list is the set of nodes and edges of the merged clusters.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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