drawEdgeTreeHeatMap: Draws a heatmap with dendrogram with clusters identified.

In SystemsGenetics/KINC.R: Provides additional functions for network files created using KINC.

Description

Draws a heatmap with dendrogram with clusters identified.

Usage

drawEdgeTreeHeatMap(sampleMatrix, tree, osa, fieldOrder, image_name = NA)

Arguments

sampleMatrix	The sample matrix as created by the getSampleMatrix() function.
tree	An instance of an hclust object as created by the clusterEdges() function.
osa	The sample annotation matrix as created by the loadSampleAnnotations() function.
fieldOrder	A vector containing a list of sample names for reordering of of the samples. Each element of this vector should be the name of a column in the osa matrix. The sorting occurs first by the first element, then by the second, etc.
image_name	The filename for saving the image. If no name is provided then the image is not saved.

SystemsGenetics/KINC.R documentation built on Nov. 10, 2021, 9:22 p.m.