Files in UvA-MAD/SeqLibR
Sequence Library
DESCRIPTION
NAMESPACE
R/ns.blast.R
R/ns.blast.db.R
R/ns.blast.unique.names.R
R/ns.blat.R
R/ns.cg.content.R
R/ns.clean.R
R/ns.dg.self.hybridization.R
R/ns.gen.tile.R
R/ns.nimblegen.cycles.R
R/ns.read.fasta.R
R/ns.read.table.R
R/ns.reverse.complement.R
R/ns.t.melt.R
R/ns.write.fasta.R
README.md
inst/extdata/Makefile
inst/extdata/Makefile.am
inst/extdata/Makefile.in
inst/extdata/asint1x2.DAT
inst/extdata/asint1x2.DG
inst/extdata/asint1x2.DGD
inst/extdata/asint1x2.DH
inst/extdata/asint1x2.DHD
inst/extdata/asint1x2.NUL
inst/extdata/asint1x2.NULD
inst/extdata/asint1x2.NULDAT
inst/extdata/dangle.DAT
inst/extdata/dangle.DG
inst/extdata/dangle.DGD
inst/extdata/dangle.DH
inst/extdata/dangle.DHD
inst/extdata/dangle.NUL
inst/extdata/dangle.NULD
inst/extdata/dangle.NULDAT
inst/extdata/extinction.DAT
inst/extdata/hexaloop.DAT
inst/extdata/hexaloop.DG
inst/extdata/hexaloop.DGD
inst/extdata/hexaloop.DH
inst/extdata/hexaloop.DHD
inst/extdata/hexaloop.NUL
inst/extdata/hexaloop.NULD
inst/extdata/hexaloop.NULDAT
inst/extdata/loop.DAT
inst/extdata/loop.DG
inst/extdata/loop.DGD
inst/extdata/loop.DH
inst/extdata/loop.DHD
inst/extdata/loop.NUL
inst/extdata/loop.NULD
inst/extdata/loop.NULDAT
inst/extdata/miscloop.DAT
inst/extdata/miscloop.DG
inst/extdata/miscloop.DGD
inst/extdata/miscloop.DH
inst/extdata/miscloop.DHD
inst/extdata/miscloop.NUL
inst/extdata/miscloop.NULD
inst/extdata/miscloop.NULDAT
inst/extdata/rules/asint1x2.dat
inst/extdata/rules/asint1x2.dg
inst/extdata/rules/asint1x2.dgd
inst/extdata/rules/asint1x2.dh
inst/extdata/rules/asint1x2.dhd
inst/extdata/rules/coaxial.dat
inst/extdata/rules/coaxstack.dat
inst/extdata/rules/dangle.dat
inst/extdata/rules/dangle.dg
inst/extdata/rules/dangle.dgd
inst/extdata/rules/dangle.dh
inst/extdata/rules/dangle.dhd
inst/extdata/rules/extinction.dat
inst/extdata/rules/extinction.dat.bp
inst/extdata/rules/hexaloop.dat
inst/extdata/rules/hexaloop.dg
inst/extdata/rules/hexaloop.dgd
inst/extdata/rules/hexaloop.dh
inst/extdata/rules/hexaloop.dhd
inst/extdata/rules/loop.dat
inst/extdata/rules/loop.dg
inst/extdata/rules/loop.dgd
inst/extdata/rules/loop.dh
inst/extdata/rules/loop.dhd
inst/extdata/rules/miscloop.dat
inst/extdata/rules/miscloop.dg
inst/extdata/rules/miscloop.dgd
inst/extdata/rules/miscloop.dh
inst/extdata/rules/miscloop.dhd
inst/extdata/rules/sint2.dat
inst/extdata/rules/sint2.dg
inst/extdata/rules/sint2.dgd
inst/extdata/rules/sint2.dh
inst/extdata/rules/sint2.dhd
inst/extdata/rules/sint4.dat
inst/extdata/rules/sint4.dg
inst/extdata/rules/sint4.dgd
inst/extdata/rules/sint4.dh
inst/extdata/rules/sint4.dhd
inst/extdata/rules/stack.dat
inst/extdata/rules/stack.dg
inst/extdata/rules/stack.dgd
inst/extdata/rules/stack.dh
inst/extdata/rules/stack.dhd
inst/extdata/rules/tloop.dat
inst/extdata/rules/tloop.dg
inst/extdata/rules/tloop.dgd
inst/extdata/rules/tloop.dh
inst/extdata/rules/tloop.dhd
inst/extdata/rules/triloop.dat
inst/extdata/rules/triloop.dg
inst/extdata/rules/triloop.dgd
inst/extdata/rules/triloop.dh
inst/extdata/rules/triloop.dhd
inst/extdata/rules/tstackcoax.dat
inst/extdata/rules/tstacke.dat
inst/extdata/rules/tstacke.dg
inst/extdata/rules/tstacke.dgd
inst/extdata/rules/tstacke.dh
inst/extdata/rules/tstacke.dhd
inst/extdata/rules/tstackh.dat
inst/extdata/rules/tstackh.dg
inst/extdata/rules/tstackh.dgd
inst/extdata/rules/tstackh.dh
inst/extdata/rules/tstackh.dhd
inst/extdata/rules/tstacki.dat
inst/extdata/rules/tstacki.dg
inst/extdata/rules/tstacki.dgd
inst/extdata/rules/tstacki.dh
inst/extdata/rules/tstacki.dhd
inst/extdata/rules/tstacki23.dat
inst/extdata/rules/tstacki23.dg
inst/extdata/rules/tstacki23.dgd
inst/extdata/rules/tstacki23.dh
inst/extdata/rules/tstacki23.dhd
inst/extdata/rules/tstackm.dat
inst/extdata/rules/tstackm.dg
inst/extdata/rules/tstackm.dgd
inst/extdata/rules/tstackm.dh
inst/extdata/rules/tstackm.dhd
inst/extdata/sint2.DAT
inst/extdata/sint2.DG
inst/extdata/sint2.DGD
inst/extdata/sint2.DH
inst/extdata/sint2.DHD
inst/extdata/sint2.NUL
inst/extdata/sint2.NULD
inst/extdata/sint2.NULDAT
inst/extdata/sint4.DAT
inst/extdata/sint4.DG
inst/extdata/sint4.DGD
inst/extdata/sint4.DH
inst/extdata/sint4.DHD
inst/extdata/sint4.NUL
inst/extdata/sint4.NULD
inst/extdata/sint4.NULDAT
inst/extdata/stack.DAT
inst/extdata/stack.DG
inst/extdata/stack.DGD
inst/extdata/stack.DH
inst/extdata/stack.DHD
inst/extdata/stack.NUL
inst/extdata/stack.NULD
inst/extdata/stack.NULDAT
inst/extdata/tloop.DAT
inst/extdata/tloop.DG
inst/extdata/tloop.DGD
inst/extdata/tloop.DH
inst/extdata/tloop.DHD
inst/extdata/tloop.NUL
inst/extdata/tloop.NULD
inst/extdata/tloop.NULDAT
inst/extdata/triloop.DAT
inst/extdata/triloop.DG
inst/extdata/triloop.DGD
inst/extdata/triloop.DH
inst/extdata/triloop.DHD
inst/extdata/triloop.NUL
inst/extdata/triloop.NULD
inst/extdata/triloop.NULDAT
inst/extdata/tstacke.DAT
inst/extdata/tstacke.DG
inst/extdata/tstacke.DGD
inst/extdata/tstacke.DH
inst/extdata/tstacke.DHD
inst/extdata/tstacke.NUL
inst/extdata/tstacke.NULD
inst/extdata/tstacke.NULDAT
inst/extdata/tstackh.DAT
inst/extdata/tstackh.DG
inst/extdata/tstackh.DGD
inst/extdata/tstackh.DH
inst/extdata/tstackh.DHD
inst/extdata/tstackh.NUL
inst/extdata/tstackh.NULD
inst/extdata/tstackh.NULDAT
inst/extdata/tstacki.DAT
inst/extdata/tstacki.DG
inst/extdata/tstacki.DGD
inst/extdata/tstacki.DH
inst/extdata/tstacki.DHD
inst/extdata/tstacki.NUL
inst/extdata/tstacki.NULD
inst/extdata/tstacki.NULDAT
inst/extdata/tstacki23.DAT
inst/extdata/tstacki23.DG
inst/extdata/tstacki23.DGD
inst/extdata/tstacki23.DH
inst/extdata/tstacki23.DHD
inst/extdata/tstacki23.NULD
inst/extdata/tstacki23.NULDAT
inst/extdata/tstackm.DAT
inst/extdata/tstackm.DG
inst/extdata/tstackm.DGD
inst/extdata/tstackm.DH
inst/extdata/tstackm.DHD
inst/extdata/tstackm.NUL
inst/extdata/tstackm.NULD
inst/extdata/tstackm.NULDAT
man/SeqLibR-package.Rd
man/ns.blast.Rd
man/ns.blast.db.Rd
man/ns.blast.unique.names.Rd
man/ns.blat.Rd
man/ns.cg.content.Rd
man/ns.clean.Rd
man/ns.dg.self.hybridization.Rd
man/ns.gen.tile.Rd
man/ns.nimblegen.cycles.Rd
man/ns.read.fasta.Rd
man/ns.read.table.Rd
man/ns.reverse.complement.Rd
man/ns.t.melt.Rd
man/ns.write.fasta.Rd
src/Makefile
src/SeqLibR.c
src/SeqLibR.so
src/config.h
src/energy.c
src/energy.h
src/getopt.c
src/getopt.h
src/hybrid-ss-min.c
src/hybrid-ss-min.h
src/sequence.c
src/sequence.h
src/util.c
src/util.h
src/xmalloc.c
src/xmalloc.h
