ns.t.melt: Calculate melting temerature of sequence

Description Usage Arguments Details Value Author(s) Examples

Description

Use Nearest neighbor method with parameters by Santa Lucia to estimate melting temperature of a sequence.

Usage

1
ns.t.melt(s, ct = 1e-12)

Arguments

s

a vector of sequences in standard IUB/IUPAC nucleic acid codes

ct

sequence concentration

Details

Sequences with non determined nucleotides (not A,C,G or T) will return NA

Value

A vector of reals giving the melting temperature of all entered sequences

Author(s)

Wim de Leeuw

Examples

1
  ns.t.melt(c("ATATATATA","CCCCGGGCGCG","CGCGGGGCATTATATCTACTACTAGTATCT"));

UvA-MAD/SeqLibR documentation built on May 9, 2019, 9:40 p.m.