ns.read.table: Read sequence from a tab separated file

In UvA-MAD/SeqLibR: Sequence Library

Description

Read a tab separated file and put the read sequences in a character vector.

Usage

  ns.read.table(ffile,name.col = 1,seq.col=2,header=FALSE)

Arguments

ffile	A character vector containing filename to read
seq.col	The column number of the table containing the sequence
name.col	The column number of the table containing an identifier of the sequence. If the value 0 is given. Then no identifiers are assigned
header	Flag if the first line of the file contains a header. The content of the header is ignored.

Details

The function reads a tab separated file in which one of the columns

Value

The function returns a character vector containing the sequences. The names of the sequences are the set if the name.col to the column number containing the names.

Note

No error checking is done currently so beware.

Author(s)

Wim de Leeuw ([e-mail])

References

–

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

UvA-MAD/SeqLibR documentation built on May 9, 2019, 9:40 p.m.