ns.cg.content: CG-content
In UvA-MAD/SeqLibR: Sequence Library
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Calculate CG content of a sequence
Usage
1
Arguments
s
a vector of sequences in standard IUB/IUPAC nucleic acid codes
Details
Codes which represent non determined nucleotides will be countet as
if the probability for each nucleotide is equal. For example D (G, A or T)
will be counted as 0.33333.
Value
A vector of reals giving the cg-content of all entered sequences
Author(s)
Wim de Leeuw
Examples
1
ns.cg.content(c("ATATATATA","CCCCGGGCGCG","CGCGGGGCATTATATCTACTACTAGTATCT"));
UvA-MAD/SeqLibR documentation built on May 9, 2019, 9:40 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Calculate CG content of a sequence
Usage
1 |
Arguments
s |
a vector of sequences in standard IUB/IUPAC nucleic acid codes |
Details
Codes which represent non determined nucleotides will be countet as if the probability for each nucleotide is equal. For example D (G, A or T) will be counted as 0.33333.
Value
A vector of reals giving the cg-content of all entered sequences
Author(s)
Wim de Leeuw
Examples
1 | ns.cg.content(c("ATATATATA","CCCCGGGCGCG","CGCGGGGCATTATATCTACTACTAGTATCT"));
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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