ns.blast.unique.names: Check sequence names for uniqueness
In UvA-MAD/SeqLibR: Sequence Library
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Helper function to see if sequence names can be used in blast alignment.
Usage
1
Arguments
names
vector of sequence names
Details
Blast returns the first word of the fasta comment as an id. If multiple sequences have the
same first word it would be impossible to reliable interpret the result. This function can
be used to check uniqueness.
Value
TRUE is the names are unique, FALSE otherwise.
Author(s)
Wim de Leeuw
Examples
1
2
3
ns.blast.unique.names(c("sequence1","sequence2","sequence3"))
ns.blast.unique.names(c("myset sequence1","myset sequence2","myset sequence3"))
UvA-MAD/SeqLibR documentation built on May 9, 2019, 9:40 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Helper function to see if sequence names can be used in blast alignment.
Usage
1 |
Arguments
names |
vector of sequence names |
Details
Blast returns the first word of the fasta comment as an id. If multiple sequences have the same first word it would be impossible to reliable interpret the result. This function can be used to check uniqueness.
Value
TRUE is the names are unique, FALSE otherwise.
Author(s)
Wim de Leeuw
Examples
1 2 3 | ns.blast.unique.names(c("sequence1","sequence2","sequence3"))
ns.blast.unique.names(c("myset sequence1","myset sequence2","myset sequence3"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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