Man pages for WilsonImmunologyLab/LinQView
Integrate information from both transcriptome and cell surface protein signals to better identify cell heterogeneity
| attachModal | attachModal (not finished) |
| buildKNN | buildKNN |
| buildMST | buildMST |
| buildPG | buildPG |
| clusteringFromDistance | clusteringFromDistance |
| createObject | createObject |
| dataNormalization | dataNormalization |
| dataScaling | dataScaling |
| distHeatMap | distHeatMap |
| errorFunction | errorFunction |
| EucNorm | EucNorm function |
| generateGridDimPlot | generateGridDimPlot |
| gradientDescent | gradientDescent |
| gradientDescentCpp | gradient descnet method |
| gradientFunction | gradientFunction |
| gradientFunctionCpp | gradient function for gradient descnet method |
| grapes-iff-grapes | Set a default value if an object is null |
| gridDimPlot | gridDimPlot |
| heatMapPlot | heatMapPlot |
| highCorrelatedGenePlot | highCorrelatedGenePlot |
| jointDistance | jointDistance.Seurat |
| LightTheme | A seurat style theme for ggplot2 figures |
| listPlot | listPlot |
| loadMatrix | loadMatrix |
| loadTable | loadTable |
| Melt | Melt a data frame |
| objectiveFunctionCpp | objective function for gradient descnet method |
| plotInfo | plotInfo |
| readDataFrom10X | readDataFrom10X |
| removeGene | removeGene |
| removeProtein | removeProtein |
| scaleDistCpp | Scale distance using a sigmoid function. The main purpose is... |
| scaleDistUpdateCpp | Scale distance using a sigmoid function. The main purpose is... |
| scoreADT | scoreADTfun |
| scoreADTfun | scoreADTfun |
| scoreRNA | scoreRNA |
| Sigmoid | Sigmoid function |
| SingleRasterMap | A single heatmap from ggplot2 using geom_raster. Copy from... |
| softThreshold | softThreshold.Seurat |
| tsneFromDistane | tsneFromDistane.Seurat |
| umapFromDistane | umapFromDistane.Seurat |
