buildKNN: buildKNN

In WilsonImmunologyLab/LinQView: Integrate information from both transcriptome and cell surface protein signals to better identify cell heterogeneity

Description

build knn network based on user's choice (RNA, ADT, Joint or All)

Usage

buildKNN(object, ...)

Arguments

object	Seurat object, or dist object
assay	(For Seurat) user choose the assay data they want to build a MST based on, can be RNA, ADT, Joint or All (All means calculate all three)
k	k value for KNN graph. Default = 10

WilsonImmunologyLab/LinQView documentation built on Jan. 3, 2022, 10 p.m.