buildMST: buildMST
In WilsonImmunologyLab/LinQView: Integrate information from both transcriptome and cell surface protein signals to better identify cell heterogeneity
Description
If input Seurat object, build Minimum spanning tree (MST) based on user's choice (RNA, ADT, Joint or All). Also can build MST for any input dist object
Usage
1
Arguments
object
Seurat object, or dist object, or N*N distance martix
assay
If object = Seurat object, user choose the assay data they want to build a MST based on, can be RNA, ADT, Joint or All (All means calculate all three)
WilsonImmunologyLab/LinQView documentation built on Jan. 3, 2022, 10 p.m.
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Description
If input Seurat object, build Minimum spanning tree (MST) based on user's choice (RNA, ADT, Joint or All). Also can build MST for any input dist object
Usage
1 |
Arguments
object |
Seurat object, or dist object, or N*N distance martix |
assay |
If object = Seurat object, user choose the assay data they want to build a MST based on, can be RNA, ADT, Joint or All (All means calculate all three) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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