removeGene: removeGene
In WilsonImmunologyLab/LinQView: Integrate information from both transcriptome and cell surface protein signals to better identify cell heterogeneity
Description
remove unwanted genes by gene name pattern (e.g. Ig genes)
For some cells, the expression of some specific genes may not related to the real cell popultion but will affect the cell clustering results. User can remove those genes from raw data before perform further analysis
An example is Ig genes for B cells.
Usage
1
removeGene(object = NULL, pattern = NULL)
Arguments
object
Seurat object
pattern
the pattern (regular expression) of unwanted genes (e.g. '^IG[HKL]' for IgH, IgK, IgL genes). For more information about regular expression, please visit https://en.wikipedia.org/wiki/Regular_expression
WilsonImmunologyLab/LinQView documentation built on Jan. 3, 2022, 10 p.m.
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Description
remove unwanted genes by gene name pattern (e.g. Ig genes) For some cells, the expression of some specific genes may not related to the real cell popultion but will affect the cell clustering results. User can remove those genes from raw data before perform further analysis An example is Ig genes for B cells.
Usage
1 | removeGene(object = NULL, pattern = NULL)
|
Arguments
object |
Seurat object |
pattern |
the pattern (regular expression) of unwanted genes (e.g. '^IG[HKL]' for IgH, IgK, IgL genes). For more information about regular expression, please visit https://en.wikipedia.org/wiki/Regular_expression |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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