generateGridDimPlot: generateGridDimPlot

In WilsonImmunologyLab/LinQView: Integrate information from both transcriptome and cell surface protein signals to better identify cell heterogeneity

Description

generate a grid dim plot object list for RNA, ADT and joint analysis

Usage

generateGridDimPlot(
  object = NULL,
  assays = c("RNA", "ADT", "Joint"),
  darkTheme = TRUE,
  legend = TRUE,
  cluster.label = TRUE,
  cluster.lable.size = 5,
  reduction = "tsne"
)

Arguments

object	seurat object
assays	assays user want to plot and compare
darkTheme	switch for darkTheme (TRUE or FALSE)
legend	switch for showing legend in each sub plot (TRUE or FALSE)
cluster.label	swicth for showing cluster label on each sub plot (TRUE or FALSE)
cluster.lable.size	font size for cluster labels
reduction	reduction for all assays. Choose from tsne or umap

WilsonImmunologyLab/LinQView documentation built on Jan. 3, 2022, 10 p.m.